Expression Coherence Results for Known Promoter Motifs

Expression Coherence Results for Known Promoter Motifs

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Motifs	Sequence	Condition		EC	P-value

MCB	ACGCG	Cell Cycle¹
Consensus				0.12	6.3x10^-2		EC Graph
Conserved				0.50	<1.1x10^-6		EC Graph
Conserved and Aligned				0.62	<1.1x10^-6		EC Graph


NDT80	CACAAA	Meiosis²
Consensus				0.06	7.3x10^-1		EC Graph
Conserved				0.46	<1.1x10^-6		EC Graph
Conserved and Aligned				0.53	<1.1x10^-6		EC Graph


SCB	CGCGAAA	Cell Cycle
Consensus				0.15	1.6x10^-2		EC Graph
Conserved				0.37	<1.1x10^-6		EC Graph
Conserved and Aligned				0.49	<1.1x10^-6		EC Graph


GCN4	TGAGTCA	MMS³
Consensus				0.11	1.1x10^-1		EC Graph
Conserved				0.19	7.6x10^-4		EC Graph
Conserved and Aligned				0.30	N/D		EC Graph


RPN4	TTTGCCACC	Cell Cycle
Consensus				0.11	1.5x10^-1		EC Graph
Conserved				0.40	<1.1x10^-6		EC Graph
Conserved and Aligned				0.50	N/D		EC Graph

References

1) Cho, Campbell, et. al. "A Genome-Wide Transcriptional Analysis of the Mitotic Cell Cycle", Molecular Cell (1998) 2:p.65-73

2) Primig M, Williams RM, et. al. "The core meiotic transcriptome in budding yeasts". Nat Genet. 2000 Dec;26(4):415-23.

3) Jelinsky, et. al.; "Regulatory Networks Revealed by Transcriptional Profiling Of Damaged Saccharomyces cerevisiae Cells: RPN4 Links Base Exciession Repair with Proteasomes"; Mol Cell Biol. (2000) 20(21):p.8157-67.