Software

SNPSeeker  by Francesco Vallania (Druley TE et al Nature Methods 2009)
Algorithm for detection of rare substitutions in pooled-DNA sequencing in Illumina 1G next-gen sequencing.
(replaced by SPLINTER)

SPLINTER by Francesco Vallania (Vallania FLM et al Genome Research 2010)
Algorithm for detection of rare indels and substitutions in pooled-DNA sequencing
in Illumina 1G/2G/High-Seq next-gen sequencing using synthetic control information.