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Leparc, GG and Mitra RD. A Sensitive Procedure to Detect Wang, H, Johnston, M, Mitra, RD. Calling Cards for DNA-binding Leparc, GG and Mitra RD. Non-EST-based prediction of novel Zhang K, Zhu J, Shendure J, Porreca GJ, Aach JD, Mitra RD, Church GM. Shendure J, Porreca GJ, Reppas NB, Lin X, McCutcheon JP, Rosenbaum AM, Shendure J, Mitra R, Varma C, Church GM (2004) Advanced Sequencing Technologies: Methods and Goals. Nature Reviews of Genetics, 5, 335 –344 Mikkilineni V, Mitra RD, Merritt J, DiTonno JR, Church GM, Ogunnaike B, Edwards JS. Digital quantitative measurements of gene expression. Biotechnol Bioeng. 2004 Apr 20;86(2):117-24. Buhler, J., Souvenir, R., Zhang, W, and Mitra, R. (2004) Design of a high-throughput assay for alternative splicing using polymerase colonies. Pac Symp Biocomput. 5-16. Zhu, J., Shendure, J., Mitra, R.D., and Church, G.M. (2003) Single Molecule Profiling of Alternative Pre-mRNA Splicing. Science. 301(5634):836-8. Merritt, J, DiTonno, JR, Mitra,
RD, Church, GM, Edwards, JS (2003) Functional
characterization of mutant yeast PGK1 within the context of the whole
cell. Nucleic Acids Research 2003 Aug 1;31(15):e84. . Mitra, R.D., Butty, V., Shendure, J., Housman, D., and Church, G.M. (2003) Digital Genotyping and Haplotyping with Polymerase Colonies. Supplementary Text. Supplementary Figure 6. Supplementary Table 3. Proc Natl Acad Sci. 100(10):5926-31. Cohen, B.A., Pilpel, Y., Mitra, R.D., and Church, G.M. (2002) Discrimination Between Paralogs Using Microarray Analysis: Application to the Yap1p and Yap2p Transcriptional Networks. Mol. Biol. Cell, 13:1608-1614. Cohen, B.A.*, Mitra,
R.D.*, Hughes, J.D., and Church, G.M. (2000) A
computational analysis of whole-genome expression data reveals chromosomal
domains of gene expression. Nature Genetics 26(2):183-186. Mitra R.D. and Church, G.M. (1999) In situ localized amplification and contact replication of many individual DNA molecules. Nucleic Acids Res 1999 Dec 15;27(24):e34; pp.1-6. Mitra, R.D., Silva, C.M., Youvan, D.C. (1996) Fluorescence resonance energy transfer between blue-emitting and red-shifted excitation derivatives of the green fluorescent protein. Gene 173: 13-17. Jones, H.L.J., Mitra, R.D., Silva, C.M. (1995) Using GFP expressing E.coli to measure ingestion rates in mixotrophic algae and ciliates. European Journal of Protistology 31: 437. |
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