Selected Publications

J.J. Havranek and D. Baker "Motif-directed flexible backbone design of functional interactions" Prot. Sci. 2009 (in press)

J.A. Ashworth, J.J. Havranek, C.M. Duarte, D. Sussman, R.J. Monnat, B.L. Stoddard, D. Baker "Computational redesign of endonuclease DNA binding and cleavage specificity" Nature 2009; 441(7093): 656‑659.

A.V. Morozov, J.J. Havranek, D. Baker, E.D. Siggia "Protein-DNA binding specificity predictions with structural models" Nuc. Acids Res. 2005; 33(18): 5781-5798.

J.J. Havranek, C.M. Duarte, and D. Baker "A Simple Physical Model for the Prediction and Design of Protein-DNA Interactions" J. Mol. Biol. 2004; 344(1): 59-70.

J.J. Havranek, P.B. Harbury "Automated Design of Specificity in Molecular Recognition" Nature Struct. Biol. 2003; 10(1): 45-52.

J.J. Havranek, P.B. Harbury "Tanford-Kirkwood Electrostatics for Protein Modeling" Proc. Natl. Acad. Sci. 1999; 96(20): 11145-11150.