| 2011 |
Hyma, K. E. and J. C. Fay. Divergence in wine characteristics produced by wild and domesticated strains of Saccharomyces cerevisiae. FEMS Yeast Res 11: 540-51. pdf Fay, J. C. Weighing evidence for adaptation at the molecular level. Trends Genet 27: 343-9. pdf Chun, S. and J. C. Fay. Evidence for hitchhiking of deleterious mutations within the human genome. PLoS Genet 7: e1002240. pdf Plunkett, J., Doniger, S., Orabona, G., Morgan, T., Haataja, R., Hallman, M., Puttonen, H., Menon, R., Kuczynski, E., Norwitz, E., Snegovskikh, V., Palotie, A., Peltonen, L., Fellman, V., DeFranco, E. A., Chaudhari, B. P., McGregor, T. L., McElroy, J. J., Oetjens, M. T., Teramo, K., Borecki, I., Fay, J. and L. Muglia. An evolutionary genomic approach to identify genes involved in human birth timing.PLoS Genet 7: e1001365. pdf | |
| 2010 |
Plunkett, J., Doniger, S., Morgan, T., Haataja, R., Hallman, M., Puttonen, H., Menon, R., Kuczynski, E., Norwitz, E., Snegovskikh, V., Palotie, A., Peltonen, L., Fellman, V., DeFranco, E. A., Chaudhari, B. P., Oates, J., Boutaud, O., McGregor, T.L., McElroy, J. J., Teramo, K., Borecki, I., Fay, J. C., Muglia, L. J. Primate-specific evolution of noncoding element insertion into PLA2G4C and human preterm birth. BMC Med Genomics 3: 62. pdf Venkataram, S. and J. C. Fay. Is transcription factor binding site turnover a sufficient explanation for cis-regulatory sequence divergence? Genome Biol Evol 2: 851-8. pdf | |
| 2009 |
Chun, S. and J. C. Fay. Identification of deleterious mutations within three human genomes. Genome Research 19: 1553-1561. pdf Likelihood Ratio Test webserver Kim, H. S. and J. C. Fay. A combined cross analysis reveals genes with drug-specific and background-dependent effects on drug-sensitivity in Saccharomyces cerevisiae. Genetics 183: 1141-51. pdf Kim, H. S., Huh, J., and J. C. Fay. Dissecting the pleiotropic consequences of a quantitative trait nucleotide. FEMS Yeast Res 9: 713-722. pdf | |
| 2008 |
Doniger, S. W., Kim, H. S., Swain, D., Corcuera, D., Williams, M., Yang, S. P. and J. C. Fay. A catalog of neutral and deleterious polymorphism in yeast. PLoS Genetics 4: e1000183.
pdf Fay, J. C. and P. J. Wittkopp. Evaluating the role of natural selection in the evolution of gene regulation. Heredity 100: 191-9. pdf | |
| 2007 |
Kim, H. S. and J. C. Fay. Genetic variation in the cysteine biosynthesis pathway causes sensitivity to pharmacological compounds. Proc Natl Acad Sci U S A 104: 19387-91. pdf Doniger, S. W. and J. C. Fay. Frequent gain and loss of functional transcription factor binding sites. PLoS Comput Biol 3: e99. pdf | |
| 2006 |
Fay, J. C. and L. Kruglyak. A white paper for sequencing multiple strains of Saccharomyces cerevisiae. pdf | |
| 2005 |
Fay, J. C. and J. A. Benavides. Hypervariable noncoding sequences in Saccharomyces cerevisiae. Genetics 170: 1575-87. pdf Fay, J. C. and J. A. Benavides. Evidence for domesticated and wild populations of Saccharomyces cerevisiae. PLoS Genetics 1: 66-71. pdf Fay, J. C. and C.-I Wu. Detecting hitchhiking from patterns of DNA polymorphism. In Selective sweeps, Nurminsky, D., ed. Landes Biosciences, Georgetown, Texas. pdf Doniger, S. W., Huh, J. and J. C. Fay. Identification of functional transcription factor binding sites using closely related Saccharomyces species. Genome Research 15: 701-709. pdf | |
| 2004 |
Fay, J. C., McCullough, H. L., Sniegowski, P. D., Eisen, M. B. Population genetic variation in gene expression is associated with phenotypic variation in Saccharomyces cerevisiae. Genome Biology 5: R26.
pdf | |
| 2003 |
Fay, J. C. and C.-I Wu. Sequence divergence, functional constraint and selection
in protein evolution. Annu Rev Genomics Hum Genet 3: 213-235.
pdf | |
|
2002 |
Fay, J. C., G. J. Wyckoff and C.-I Wu. Testing the neutral theory of molecular
evolution with genomic data from Drosophila. Nature 415: 1024-1026.
pdf | |
|
2001 |
Fay, J. C. and C.-I Wu. The neutral theory in the genomic era.
Curr Opin Genet Dev 11: 642-646. pdf Fay, J. C., G. J. Wyckoff and C.-I Wu. Positive and negative selection on the human genome. Genetics 155: 1227-1234. pdf supplement | |
|
2000 |
Fay, J. C. and C.-I Wu. Hitchhiking under positive Darwinian selection.
Genetics 155: 1405-1413. pdf appendix | |
|
1999 |
Fay, J. C. and C.-I Wu. A human population bottleneck can account for the
discordance between patterns of mitochondrial and nuclear DNA variation. Mol Biol Evol 16: 1003-1005.
pdf | |
|
1997 |
Fay, J. C. and W. E. Fry. Effects of hot and cold temperatures on the survival of oospores produced
by United States strains of Phytophthora infestans. American Potato Journal 74: 315-323. |