Recent Publications

Oxaliplatin-induced cardiotoxicity in mice is connected to the changes in energy metabolism in the heart tissueDu, J., Sudlow, L. C., Shahverdi, K., Zhou, H., Michie, M. S., Schindler, T. H., Mitchell, J. D., Mollah, S. & Berezin, M. Y., Dec 2026, In: Cardio-Oncology. 12, 1, 39.Research output: Contribution to journal › Article › peer-review

Whole genome sequence analysis of pulmonary function and COPD in 44,287 multi-ancestry participantsKim, W., Hu, X., Kim, K., Chun, S., Orchard, P., Qiao, D., Ruczinski, I., Saferali, A., Aguet, F., Antonacci-Fulton, L., Balte, P. P., Bartz, T. M., Anamika, W. J., Zhou, X., Duan, J. Y., Brody, J. A., Cade, B. E., Daviglus, M. L., […]

Expression spectrum of TE-driven transcripts in human adult tissuesMiao, B., Luo, X., Ademovic, A., Yang, Y., Wu, T. P. & Zhang, B. A., Dec 2026, In: Genome biology. 27, 1, 54.Research output: Contribution to journal › Article › peer-review

Using the linear references from the pangenome to discover missing autism variantsHuman Pangenome Reference Consortium (HPRC), Dec 2026, In: Nature communications. 17, 1, 1681.Research output: Contribution to journal › Article › peer-review

A new chromosome-level genome assembly for western painted turtle Chrysemys picta bellii, a model for extreme physiological adaptationsChen, J., Bermingham, J. R., Minx, P., Kremitzky, M., Lin, Z. & Warren, D. E., Dec 2026, In: BMC genomics. 27, 1, 375.Research output: Contribution to journal › Article › peer-review

Enzyme tethering for in situ epigenomicsAhmad, K., Brahma, S., Janssens, D. H., Kind, J., Khyzha, N., Meers, M. P., Ramachandran, S., Zheng, Y. & Henikoff, S., Dec 2026, In: Nature Reviews Methods Primers. 6, 1, 42.Research output: Contribution to journal › Review article › peer-review

Antecedent enhancer activity predicts future susceptibility to seizures in miceBoros, B. D., Gachechiladze, M. A., Guo, J., Galloway, D. A., Mueller, S. M., Shabsovich, M., Yen, A., Chen, X., Cammack, A. J., Shen, T., Mitra, R. D., Dougherty, J. D. & Miller, T. M., Dec 2026, In: Nature communications. 17, 1, 300.Research output: Contribution to […]

Familial healthy aging and longevity: the role of spousesNetra, S., Galvin, A., Keys, M., Lawaetz Kristensen, K., Krabbe Pedersen, J., Thyagarajan, B., Ukraintseva, S., Wojczynski, M. K., Boomsma, D. I. & Christensen, K., Dec 2026, In: BMC Medicine. 24, 1, 355.Research output: Contribution to journal › Article › peer-review

Enhancing inference of differential gene expression in metatranscriptomes from human microbial communitiesLee, E. M., McNulty, N. P., Hibberd, M. C., Cheng, J., Ahsan, K., Chang, H. W., Cohen, B. A. & Gordon, J. I., Dec 2026, In: Nature communications. 17, 1, 5490.Research output: Contribution to journal › Article › peer-review

Homozygous RFC1 AAGGG Repeat Expansions Are Common in Idiopathic Peripheral NeuropathyPNRR Study Group, Jul 2026, In: Annals of neurology. 100, 1, p. 95-108 14 p.Research output: Contribution to journal › Article › peer-review

Brain-engrafted monocyte-derived macrophages from blood and skull-bone marrow exhibit distinct propertiesDu, S., Ou, F., Drieu, A., Xu, E. Z., Cheng, Y., Storck, S. E., Mamuladze, T., Cao, J., Abduljawad, N., Bhattarai, B., Rustenhoven, J., Mortimer, N., Brioschi, S., Nguyen, K., Rodrigues, P. F., Smirnov, I., Gibson, D., Michael White, J., Beatty, W. & DeNardo, D. […]

Characterizing cytosine methylation of polymorphic transposable element insertions using the human pangenome resourcesHuman Pangenome Reference Consortium, Jun 2026, In: Genome research. 36, 6, p. 1108-1124 17 p.Research output: Contribution to journal › Article › peer-review

BioMedGraphica: an all-in-one platform for joint textual biomedical prior knowledge and numeric graph generationZhang, H., Liang, S., Xu, T., Li, W., Huang, D., Dong, Y., Li, G., Miller, P., Goedegebuure, P., Sardiello, M., Cooper, J., Buchser, W., Dickson, P., Fields, R. C., Cruchaga, C., Chen, Y., Province, M., Payne, P. & Li, F., Jun 2026, […]

Inducible Calling Cards: Developing Mouse Reagents for Experimentally Controlled Transposon Insertion In VivoSarafinovska, S., Venkatesan, A., Akinwe, T. M., Chamessian, A., Recio, P., Chen, X., Payne, M., Creed, M. C., Mitra, R. D. & Dougherty, J. D., Jun 2026, In: eNeuro. 13, 6, ENEURO.0411-25.2026.Research output: Contribution to journal › Article › peer-review

High-throughput screening approach identifies substrate-selective Hsp104 variants that counter amyloid seeding with diminished off-target effectsRyan, J. J., Miller, K. R., Puri, A., Sprunger, M. L., Bochantine, M. M., Lopez, A., Chen, S., Bao, A., Ling, C., Xu, A., Bell, B., Sohn, B. S., Li, L., Chang, C., Mohammed, K., Staller, M. V. & Jackrel, M. […]

Quantification of SARM1 NADase Activity in Human Peripheral Blood Mononuclear CellsDabill, L. F., Shen, I. R., Brazill, J. M., Neiner, A., Sasaki, Y. & Scheller, E. L., May 15 2026, In: FASEB Journal. 40, 9, e71846.Research output: Contribution to journal › Article › peer-review

Accelerating discovery of cancer causes for prevention in the era of rising early-onset cancersShi, M., Patti, G. J., Gunter, M. J., Govindan, R., Lansdorp-Vogelaar, I., Wang, T., Townsend, J. P., Colditz, G. A., Belkaid, Y. & Cao, Y., Apr 16 2026, In: Cell. 189, 8, p. 2232-2253 22 p.Research output: Contribution to journal › Article […]

Large-scale blood pressure GWAS accounting for gene-depression interactions in 564,680 individuals from diverse populationsLee, S., Miller, C. L., Bentley, A. R., Brown, M. R., Nagarajan, P., Noordam, R., Morrison, J. L., Schwander, K., Westerman, K., Kho, M., Kraja, A. T., de Vries, P. S., Ammous, F., Aschard, H., Bartz, T. M., Do, A., Dupont, C. […]

Biallelic LAMP3 variants in 5 families with interstitial lung disease: Evidence of a disease-gene associationKeehan, L. A., Ono-Minagi, H., Hadhud, M., Rips, J., Hinds, D. M., Fischer, A. J., Bartlett, J. A., McCray, P. B., Qawasmi, N., Nathan, N., Louvrier, C., Desroziers, T., Damme, M., Griese, M., Wegner, D. J., Cole, F. S., Wambach, J. […]

Epigenetic and Transcriptomic Impacts of Ethanol Vary by Brain Region and Extent of ExposurePeriandri, E. M., Dodson, K. M., Lopes, M., De Luna Vitorino, F. N., Ola, A., Gongora, J. M., Garcia, B. A., Glastad, K. M. & Egervari, G., Apr 2026, In: eNeuro. 13, 4Research output: Contribution to journal › Article › peer-review