Recent Publications

Expression spectrum of TE-driven transcripts in human adult tissuesMiao, B., Luo, X., Ademovic, A., Yang, Y., Wu, T. P. & Zhang, B. A., Dec 2026, In: Genome biology. 27, 1, 54.Research output: Contribution to journal › Article › peer-review

Whole genome sequence analysis of pulmonary function and COPD in 44,287 multi-ancestry participantsKim, W., Hu, X., Kim, K., Chun, S., Orchard, P., Qiao, D., Ruczinski, I., Saferali, A., Aguet, F., Antonacci-Fulton, L., Balte, P. P., Bartz, T. M., Anamika, W. J., Zhou, X., Duan, J. Y., Brody, J. A., Cade, B. E., Daviglus, M. L., […]

Antecedent enhancer activity predicts future susceptibility to seizures in miceBoros, B. D., Gachechiladze, M. A., Guo, J., Galloway, D. A., Mueller, S. M., Shabsovich, M., Yen, A., Chen, X., Cammack, A. J., Shen, T., Mitra, R. D., Dougherty, J. D. & Miller, T. M., Dec 2026, In: Nature communications. 17, 1, 300.Research output: Contribution to […]

Using the linear references from the pangenome to discover missing autism variantsHuman Pangenome Reference Consortium (HPRC), Dec 2026, In: Nature communications. 17, 1, 1681.Research output: Contribution to journal › Article › peer-review

Oxaliplatin-induced cardiotoxicity in mice is connected to the changes in energy metabolism in the heart tissueDu, J., Sudlow, L. C., Shahverdi, K., Zhou, H., Michie, M. S., Schindler, T. H., Mitchell, J. D., Mollah, S. & Berezin, M. Y., Dec 2026, In: Cardio-Oncology. 12, 1, 39.Research output: Contribution to journal › Article › peer-review

Large-scale blood pressure GWAS accounting for gene-depression interactions in 564,680 individuals from diverse populationsLee, S., Miller, C. L., Bentley, A. R., Brown, M. R., Nagarajan, P., Noordam, R., Morrison, J. L., Schwander, K., Westerman, K., Kho, M., Kraja, A. T., de Vries, P. S., Ammous, F., Aschard, H., Bartz, T. M., Do, A., Dupont, C. […]

Biallelic LAMP3 variants in 5 families with interstitial lung disease: Evidence of a disease-gene associationKeehan, L. A., Ono-Minagi, H., Hadhud, M., Rips, J., Hinds, D. M., Fischer, A. J., Bartlett, J. A., McCray, P. B., Qawasmi, N., Nathan, N., Louvrier, C., Desroziers, T., Damme, M., Griese, M., Wegner, D. J., Cole, F. S., Wambach, J. […]

ACSS2 mediates prenatal alcohol exposure-related morphological and behavioral phenotypesDodson, K. M., Periandri, E. M., Yadav, A., Lopes, M., Barfield, A. J., Ola, A., de Luna Vitorino, F. N., Cearlock, C., Garcia, B. A., Hill, C. A., Maloney, S. E. & Egervari, G., Apr 2026, In: Neurobiology of Disease. 221, 107341.Research output: Contribution to journal › […]

MASTR-seq enables multiplexed analysis of short tandem repeats with sequencingSu, C., Ryu, H. S., Chandradoss, K. R., Malachowski, T., Boya, R., Zhou, L., Nguyen, H. E., Mazzoni, E. O., Brennand, K. J. & Phillips-Cremins, J. E., Mar 23 2026, In: Cell Reports Methods. 6, 3, 101341.Research output: Contribution to journal › Article › peer-review

Challenges and opportunities in adapting high-throughput functional assays for in vivo neuroscienceSelmanovic, D. & Dougherty, J. D., Mar 2026, In: Trends in Neurosciences. 49, 3, p. 217-232 16 p.Research output: Contribution to journal › Review article › peer-review

Transposable element–gene chimera cartography, origination and role in enhancing transcriptome plasticityCheon, Y., Alvstad, E. G., Torre, D., Quach, D. T., Nguyen, J., Hyun, K., Zhou, M., Yu, T., Liu, L., Yoon, Y., Reese, F., Faraone, L., Li, Y., Arnold, F. J., Fstkchyan, Y. S., Basu, U., Kvon, E., Valente, E. M., Ho, J. S. Y. […]

LONP1 Variants Are Associated With Clinically Diverse PhenotypesUndiagnosed Diseases Network, Mar 2026, In: Clinical Genetics. 109, 3, p. 437-457 21 p.Research output: Contribution to journal › Article › peer-review

BACH2 regulates T cell lineage state to enhance CAR T cell functionChang, T. C., Heard, A., Lattin, J., Warrington, J. M., Barrett, A., Landmann, J. H., Tenzin, Y., Ganesh, V., Thompson, B., Afrin, S., Gupta, D. K., Chang, J. F., Ritchey, J., Selli, M. E., Hsu, Y. S., Song, H., Federico, A. J., Horn, A., […]

Finding Significant Hits in Networks: a network-based tool for analyzing gene-level P-values to identify significant genes missed by standard methodsAcharya, S., Moghaddam, V. A., Jung, W. J., Kang, Y. S., Liao, S., Province, M. A. & Brent, M. R., Mar 1 2026, In: Briefings in Bioinformatics. 27, 2, bbag061.Research output: Contribution to journal › Article […]

Ketogenic diet dampens excitatory neurotransmission by shrinking synaptic vesicle poolsStunault, M. I., Deng, P. Y., Yadav, A., Periandri, E. M., de Luna Vitorino, F. N., Thomsen, M. B., Sponagel, J., Barfield, A. J., Ponce, R. J., Foroughi, L., Garcia, B. A., Egervari, G., Klyachko, V. A. & Ashrafi, G., Feb 24 2026, In: Cell Reports. […]

Acetate enhances long-term memory in female mice by sex-, context-, and brain region-specific epigenetic and transcriptional remodelingPeriandri, E. M., Dodson, K. M., De Luna Vitorino, F. N., Garcia, B., Glastad, K. M. & Egervari, G., Feb 24 2026, In: Science signaling. 19, 926, eaec0496.Research output: Contribution to journal › Article › peer-review

NF-κB and STAT3 signaling uniquely stratify survival in female glioblastoma patientsWong, J. P., Llaci, L., Tripp, L., Jeon, M. S., Yang, L., Reinhold, N., Warrington, N. M., Luo, J., Mitra, R. D. & Rubin, J. B., Feb 20 2026, In: iScience. 29, 2, 114761.Research output: Contribution to journal › Article › peer-review

State-specific enhancer landscapes govern microglial plasticityHamagami, N., Kapadia, D., Barclay, K. M., Huang, Y., Abduljawad, N., Cheng, Z., McLaughlin, L., Singhania, D., Ding, X., Yang, J., Sun, Z., Karra, V., Du, S., Bayguinov, P., Yu, G., Li, Y. E., Gabel, H. W. & Li, Q., Feb 10 2026, In: Immunity. 59, 2, p. 288-305.e11Research output: […]

Time trends in the male to female ratio for autism incidence: population based, prospectively collected, birth cohort studyFyfe, C., Winell, H., Dougherty, J., Gutmann, D. H., Kolevzon, A., Marrus, N., Tedroff, K., Turner, T. N., Weiss, L. A., Yip, B. H. K., Yin, W. & Sandin, S., Feb 4 2026, In: BMJ. 392, e084164.Research output: […]

REV-ERB-alpha and -beta coordinately regulate astrocyte reactivity and proteostatic functionNadarajah, C. J., Li, M. Y., Quillin, E. I., Boyer, K., Dimitry, J. M., Chen, Y., King, M. W., Saliu, I. O., Lee, J., Sheehan, P. W., Davis, A. A., Lazar, M. A., Zhao, G. & Musiek, E. S., Feb 3 2026, In: Proceedings of the […]