S.E. Brenner. BLAST, Blitz, BLOCKS and BEAUTY: sequence comparision on the Net Trends in Genetics 11:330-331, 1995.
S.M. Tilghman. Lessons Learned, Promises Kept: A Biologist's Eye View of the Genome Project. Genome Research, 6:773-780, 1996.
G.L.G. Miklos and G.M. Rubin . The Role of the Genome Project in Determining Gene Function: Insights from Model Orgranisms Cell 86:521-529, 1996.
T.F. Smith and M.S. Waterman Identification of Common Molecular Subsequences J. Mol. Biol. 147: 195-197, 1981.
S.B. Needleman and C.D. Wunsch A General Method Applicable to the Search for Similarities in the Amino Acid Sequence of Two Proteins J. Mol. Biol, 40: 443-453, 1970.
S. F. Altschul and W. Gish Local Alignment Statistics Methods in Enzymology. 266: 460-480, 1996.
S. Karlin and S.F. Altschul. Methods for assessing the statistical significance of molecular sequences by using general scoring schemes Proc. Natl. Acad. Sci., 87: 2264-2268, 1990.
Altschul, et. al. Basic Local Alignment Search Tool J. Mol. Biol., 215: 403-410, 1990.
Altschul, et. al. Issues in searching molecular sequence databases Nat. Genetics, 6: 119-129, 1994.
Koonin, et. al....Fuctional motifs... Nat. Gen., 13:266-267, 1996.
C.E. Lawrence, et. al.Detecting Subtle Sequence Signals: A Gibbs Sampling Strategy for Multiple Alignment. Science, 262:208-214, 1993.
C.E. Lawrence and A.A. Reilly. An expectation maximization (EM) algorithm for the identification and characterization of common sites in unaligned biopolymer sequences. Proteins, 7:41-51, 1990.
A. Krogh, et. al. Hidden Markov Models in Computational Biology: Applications to Protein Modeling.J. Mol. Biol, 235:1501-1531, 1994.
S. Eddy. Hidden Markov models. Current Opinion in Structural Biology, 6:361-365, 1996.
J.U. Bowie, et. al. A Method to Identify Protein Sequences That Fold into a Know Three-Dimensional Structure. Science, 253:164-170, 1991.
S.H. Bryant and C.E. Lawrence An Empirical Energy Function for Threading Protein Sequence Through the Folding Motif. PROTEINS: Structure, Function, and Genetics, 16:92-112, 1993.
J.W. Fickett and C-S Tung Assessment of protein coding measures. Nucleic Acids Research, 20: 6441-6450, 1992.
M. Burset and R. Guigo Evaluation of Gene Structure Prediction Programs. Genomics, 34:353-367, 1996.
C. Burge and S. Carlin Prediction of Complete Gene Structures In Human Genomic DNA. In Press.
J.W. Fickett Finding genes by computer: the state of the art. Trends In Genetics, 12:316-320, 1996.
E.S. Lander and M.S. Waterman Genomic Mapping by Fingerprinting Random Clones: A Mathematical Analysis. Genomics, 2:231-239, 1988.